Detailed information of SNP:
|
SNP ID:
sf0804770205(Gbrowse)
Chromosome: chr08 Position: 4770205 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 57.91% | 42.09% |
| All Indica | 797 | 87.33% | 12.67% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 212 | 64.62% | 35.38% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804770205 | A->G | INTERGENIC | None |