Detailed information of SNP:
|
SNP ID:
sf0804771744(Gbrowse)
Chromosome: chr08 Position: 4771744 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 62.01% | 37.99% |
| All Indica | 797 | 81.81% | 18.19% |
| All Japonica | 493 | 34.69% | 65.31% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 334 | 15.87% | 84.13% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804771744 | G->A | INTERGENIC | None |