Detailed information of SNP:
|
SNP ID:
sf0804779759(Gbrowse)
Chromosome: chr08 Position: 4779759 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 93.41% | 6.59% |
| All Indica | 778 | 88.56% | 11.44% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 365 | 89.59% | 10.41% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 205 | 78.05% | 21.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804779759 | A->G | INTERGENIC | None |