Detailed information of SNP:
|
SNP ID:
sf0804803251(Gbrowse)
Chromosome: chr08 Position: 4803251 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 93.24% | 6.76% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 486 | 81.89% | 18.11% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 96.99% | 3.01% |
| Tropical Japonica | 90 | 28.89% | 71.11% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804803251 | C->A | INTERGENIC | None |