Detailed information of SNP:
|
SNP ID:
sf0804835538(Gbrowse)
Chromosome: chr08 Position: 4835538 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 66.07% | 33.93% |
| All Indica | 732 | 44.40% | 55.60% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 57 | 64.91% | 35.09% |
| Indica I | 339 | 48.97% | 51.03% |
| Indica II | 200 | 40.50% | 59.50% |
| Indica Intermediate | 193 | 40.41% | 59.59% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804835538 | C->T | LOC_Os08g08390(LOC_Os08g08390.1) | SNPs that introduce stop codons |