Detailed information of SNP:
|
SNP ID:
sf0804836962(Gbrowse)
Chromosome: chr08 Position: 4836962 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 95.63% | 4.37% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804836962 | T->C | LOC_Os08g08390(LOC_Os08g08390.1) | Non-Synonymous SNP |