Detailed information of SNP:
|
SNP ID:
sf0804846272(Gbrowse)
Chromosome: chr08 Position: 4846272 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 94.28% | 5.72% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 463 | 85.31% | 14.69% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 71 | 35.21% | 64.79% |
| Japonica Intermediate | 59 | 83.05% | 16.95% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804846272 | G->A | INTERGENIC | None |