Detailed information of SNP:
|
SNP ID:
sf0804847549(Gbrowse)
Chromosome: chr08 Position: 4847549 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 92.42% | 7.58% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 489 | 80.16% | 19.84% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 63 | 77.78% | 22.22% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804847549 | G->A | INTERGENIC | None |