Detailed information of SNP:
|
SNP ID:
sf0804855205(Gbrowse)
Chromosome: chr08 Position: 4855205 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 87.02% | 12.98% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 496 | 81.05% | 18.95% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804855205 | A->G | INTERGENIC | None |