Detailed information of SNP:
|
SNP ID:
sf0804855537(Gbrowse)
Chromosome: chr08 Position: 4855537 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.96% | 34.04% |
| All Indica | 798 | 87.34% | 12.66% |
| All Japonica | 495 | 24.44% | 75.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 333 | 3.60% | 96.40% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804855537 | A->G | INTERGENIC | None |