Detailed information of SNP:
|
SNP ID:
sf0804858347(Gbrowse)
Chromosome: chr08 Position: 4858347 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 65.54% | 34.46% |
| All Indica | 757 | 93.26% | 6.74% |
| All Japonica | 478 | 14.85% | 85.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 99.73% | 0.27% |
| Indica II | 183 | 73.77% | 26.23% |
| Indica Intermediate | 207 | 99.03% | 0.97% |
| Temperate Japonica | 328 | 14.33% | 85.67% |
| Tropical Japonica | 91 | 9.89% | 90.11% |
| Japonica Intermediate | 59 | 25.42% | 74.58% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804858347 | T->C | INTERGENIC | None |