Detailed information of SNP:
|
SNP ID:
sf0804861469(Gbrowse)
Chromosome: chr08 Position: 4861469 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 83.47% | 16.53% |
| All Indica | 797 | 80.68% | 19.32% |
| All Japonica | 472 | 85.17% | 14.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 211 | 60.66% | 39.34% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 315 | 87.62% | 12.38% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 64 | 62.50% | 37.50% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804861469 | C->T | INTERGENIC | None |