Detailed information of SNP:
|
SNP ID:
sf0804863013(Gbrowse)
Chromosome: chr08 Position: 4863013 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.00% | 16.00% |
| All Indica | 799 | 80.98% | 19.02% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804863013 | G->A | INTERGENIC | None |