Detailed information of SNP:
|
SNP ID:
sf0804870907(Gbrowse)
Chromosome: chr08 Position: 4870907 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 57.12% | 42.88% |
| All Indica | 786 | 82.57% | 17.43% |
| All Japonica | 484 | 9.92% | 90.08% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 367 | 86.92% | 13.08% |
| Indica II | 212 | 71.23% | 28.77% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 330 | 6.36% | 93.64% |
| Tropical Japonica | 92 | 17.39% | 82.61% |
| Japonica Intermediate | 62 | 17.74% | 82.26% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804870907 | C->A | INTERGENIC | None |