Detailed information of SNP:
|
SNP ID:
sf0804872514(Gbrowse)
Chromosome: chr08 Position: 4872514 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 60.92% | 39.08% |
| All Indica | 782 | 88.87% | 11.13% |
| All Japonica | 475 | 9.68% | 90.32% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 365 | 86.85% | 13.15% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 324 | 7.72% | 92.28% |
| Tropical Japonica | 87 | 12.64% | 87.36% |
| Japonica Intermediate | 64 | 15.62% | 84.38% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804872514 | T->C | LOC_Os08g08460(LOC_Os08g08460.1) | Non-Synonymous SNP |