Detailed information of SNP:
|
SNP ID:
sf0804874590(Gbrowse)
Chromosome: chr08 Position: 4874590 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 96.53% | 3.47% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 490 | 91.63% | 8.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 96.08% | 3.92% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 65 | 75.38% | 24.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804874590 | C->A | LOC_Os08g08460(LOC_Os08g08460.1) | Non-Synonymous SNP |