Detailed information of SNP:
|
SNP ID:
sf0804874763(Gbrowse)
Chromosome: chr08 Position: 4874763 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1217 | 53.16% | 46.84% |
| All Indica | 632 | 33.07% | 66.93% |
| All Japonica | 476 | 85.29% | 14.71% |
| Aus | 60 | 18.33% | 81.67% |
| Indica I | 276 | 40.94% | 59.06% |
| Indica II | 190 | 21.58% | 78.42% |
| Indica Intermediate | 166 | 33.13% | 66.87% |
| Temperate Japonica | 331 | 97.58% | 2.42% |
| Tropical Japonica | 81 | 39.51% | 60.49% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 37 | 40.54% | 59.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804874763 | C->T | LOC_Os08g08460(LOC_Os08g08460.1) | Non-Synonymous SNP |