Detailed information of SNP:
|
SNP ID:
sf0804875699(Gbrowse)
Chromosome: chr08 Position: 4875699 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 57.87% | 42.13% |
| All Indica | 790 | 83.67% | 16.33% |
| All Japonica | 488 | 11.48% | 88.52% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 369 | 86.45% | 13.55% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 328 | 7.32% | 92.68% |
| Tropical Japonica | 92 | 14.13% | 85.87% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804875699 | C->T | LOC_Os08g08460(LOC_Os08g08460.1) | Non-Synonymous SNP |