Detailed information of SNP:
|
SNP ID:
sf0804876339(Gbrowse)
Chromosome: chr08 Position: 4876339 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 97.30% | 2.70% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 489 | 93.05% | 6.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 90 | 88.89% | 11.11% |
| Japonica Intermediate | 64 | 73.44% | 26.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804876339 | A->T | LOC_Os08g08460(LOC_Os08g08460.1) | Non-Synonymous SNP |