Detailed information of SNP:
|
SNP ID:
sf0804882934(Gbrowse)
Chromosome: chr08 Position: 4882934 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 65.59% | 34.41% |
| All Indica | 780 | 92.95% | 7.05% |
| All Japonica | 494 | 16.60% | 83.40% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 361 | 97.78% | 2.22% |
| Indica II | 210 | 79.05% | 20.95% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 333 | 14.71% | 85.29% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804882934 | C->T | LOC_Os08g08470(LOC_Os08g08470.1) | INTRON |