Detailed information of SNP:
|
SNP ID:
sf0804886408(Gbrowse)
Chromosome: chr08 Position: 4886408 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 91.36% | 8.64% |
| All Indica | 775 | 87.48% | 12.52% |
| All Japonica | 469 | 97.23% | 2.77% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 91.60% | 8.40% |
| Indica II | 198 | 80.81% | 19.19% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 312 | 98.40% | 1.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 87.30% | 12.70% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804886408 | A->T | INTERGENIC | None |