Detailed information of SNP:
|
SNP ID:
sf0804914305(Gbrowse)
Chromosome: chr08 Position: 4914305 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 96.66% | 3.34% |
| All Indica | 788 | 94.42% | 5.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804914305 | A->G | LOC_Os08g08530(LOC_Os08g08530.1) | Non-Synonymous SNP |