Detailed information of SNP:
|
SNP ID:
sf0804930255(Gbrowse)
Chromosome: chr08 Position: 4930255 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 60.63% | 39.37% |
| All Indica | 785 | 87.39% | 12.61% |
| All Japonica | 478 | 10.04% | 89.96% |
| Aus | 58 | 93.10% | 6.90% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 205 | 83.41% | 16.59% |
| Indica Intermediate | 207 | 85.99% | 14.01% |
| Temperate Japonica | 326 | 2.76% | 97.24% |
| Tropical Japonica | 85 | 37.65% | 62.35% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804930255 | T->C | LOC_Os08g08550(LOC_Os08g08550.1) | Synonymous |