Detailed information of SNP:
|
SNP ID:
sf0804939223(Gbrowse)
Chromosome: chr08 Position: 4939223 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 64.51% | 35.49% |
| All Indica | 794 | 92.82% | 7.18% |
| All Japonica | 489 | 11.25% | 88.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 333 | 3.60% | 96.40% |
| Tropical Japonica | 88 | 38.64% | 61.36% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804939223 | G->A | INTERGENIC | None |