Detailed information of SNP:
|
SNP ID:
sf0804940328(Gbrowse)
Chromosome: chr08 Position: 4940328 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 67.33% | 32.67% |
| All Indica | 797 | 94.73% | 5.27% |
| All Japonica | 493 | 16.02% | 83.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 91 | 50.55% | 49.45% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804940328 | A->G | LOC_Os08g08560(LOC_Os08g08560.1) | INTRON |