Detailed information of SNP:
|
SNP ID:
sf0804943078(Gbrowse)
Chromosome: chr08 Position: 4943078 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 91.42% | 8.58% |
| All Indica | 794 | 93.07% | 6.93% |
| All Japonica | 494 | 93.72% | 6.28% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 209 | 77.51% | 22.49% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804943078 | A->G | INTERGENIC | None |