Detailed information of SNP:
|
SNP ID:
sf0804955342(Gbrowse)
Chromosome: chr08 Position: 4955342 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 97.87% | 2.13% |
| All Indica | 794 | 98.87% | 1.13% |
| All Japonica | 493 | 96.96% | 3.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804955342 | A->G | INTERGENIC | None |