Detailed information of SNP:
|
SNP ID:
sf0804974614(Gbrowse)
Chromosome: chr08 Position: 4974614 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 93.34% | 6.66% |
| All Indica | 794 | 96.35% | 3.65% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 65 | 30.77% | 69.23% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804974614 | T->C | INTERGENIC | None |