Detailed information of SNP:
|
SNP ID:
sf0804989902(Gbrowse)
Chromosome: chr08 Position: 4989902 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 63.97% | 36.03% |
| All Indica | 750 | 49.33% | 50.67% |
| All Japonica | 487 | 91.79% | 8.21% |
| Aus | 58 | 34.48% | 65.52% |
| Indica I | 357 | 52.10% | 47.90% |
| Indica II | 193 | 52.85% | 47.15% |
| Indica Intermediate | 200 | 41.00% | 59.00% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 90 | 68.89% | 31.11% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804989902 | T->C | LOC_Os08g08640(LOC_Os08g08640.1) | Non-Synonymous SNP |