Detailed information of SNP:



SNP ID: sf0804989902(Gbrowse)

Chromosome: chr08

Position: 4989902
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1346 63.97% 36.03%
All Indica750 49.33% 50.67%
All Japonica487 91.79% 8.21%
Aus58 34.48% 65.52%
Indica I357 52.10% 47.90%
Indica II193 52.85% 47.15%
Indica Intermediate200 41.00% 59.00%
Temperate Japonica333 98.50% 1.50%
Tropical Japonica90 68.89% 31.11%
Japonica Intermediate64 89.06% 10.94%
Group VI/Aromatic14 7.14% 92.86%
Intermediate37 62.16% 37.84%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0804989902 T->C LOC_Os08g08640(LOC_Os08g08640.1) Non-Synonymous SNP