Detailed information of SNP:
|
SNP ID:
sf0804996892(Gbrowse)
Chromosome: chr08 Position: 4996892 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 63.27% | 36.73% |
| All Indica | 777 | 85.59% | 14.41% |
| All Japonica | 471 | 22.93% | 77.07% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 370 | 92.43% | 7.57% |
| Indica II | 205 | 68.29% | 31.71% |
| Indica Intermediate | 202 | 90.59% | 9.41% |
| Temperate Japonica | 334 | 8.08% | 91.92% |
| Tropical Japonica | 81 | 75.31% | 24.69% |
| Japonica Intermediate | 56 | 35.71% | 64.29% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804996892 | T->C | INTERGENIC | None |