Detailed information of SNP:
|
SNP ID:
sf0804999247(Gbrowse)
Chromosome: chr08 Position: 4999247 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 65.87% | 34.13% |
| All Indica | 782 | 92.58% | 7.42% |
| All Japonica | 484 | 19.63% | 80.37% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 367 | 96.19% | 3.81% |
| Indica II | 208 | 87.50% | 12.50% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 82 | 58.54% | 41.46% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0804999247 | T->G | LOC_Os08g08650(LOC_Os08g08650.1) | INTRON |
| sf0804999247 | T->G | LOC_Os08g08650(LOC_Os08g08650.2) | INTRON |