Detailed information of SNP:
|
SNP ID:
sf0805017855(Gbrowse)
Chromosome: chr08 Position: 5017855 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 97.16% | 2.84% |
| All Indica | 790 | 95.95% | 4.05% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 204 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805017855 | G->A | LOC_Os08g08670(LOC_Os08g08670.1) | SNPs that introduce stop codons |