Detailed information of SNP:
|
SNP ID:
sf0805021485(Gbrowse)
Chromosome: chr08 Position: 5021485 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 61.93% | 38.07% |
| All Indica | 772 | 89.12% | 10.88% |
| All Japonica | 475 | 14.95% | 85.05% |
| Aus | 59 | 79.66% | 20.34% |
| Indica I | 368 | 96.47% | 3.53% |
| Indica II | 199 | 76.88% | 23.12% |
| Indica Intermediate | 205 | 87.80% | 12.20% |
| Temperate Japonica | 330 | 6.06% | 93.94% |
| Tropical Japonica | 80 | 35.00% | 65.00% |
| Japonica Intermediate | 65 | 35.38% | 64.62% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805021485 | G->C | INTERGENIC | None |