Detailed information of SNP:
|
SNP ID:
sf0805021885(Gbrowse)
Chromosome: chr08 Position: 5021885 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 97.78% | 2.22% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 482 | 95.02% | 4.98% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 84 | 79.76% | 20.24% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805021885 | G->A | INTERGENIC | None |