Detailed information of SNP:
|
SNP ID:
sf0805047819(Gbrowse)
Chromosome: chr08 Position: 5047819 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 60.41% | 39.59% |
| All Indica | 780 | 88.59% | 11.41% |
| All Japonica | 481 | 16.22% | 83.78% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 198 | 73.74% | 26.26% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 323 | 5.88% | 94.12% |
| Tropical Japonica | 91 | 37.36% | 62.64% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805047819 | C->A | INTERGENIC | None |