Detailed information of SNP:
|
SNP ID:
sf0805048181(Gbrowse)
Chromosome: chr08 Position: 5048181 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 58.74% | 41.26% |
| All Indica | 775 | 87.48% | 12.52% |
| All Japonica | 488 | 14.75% | 85.25% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 371 | 94.61% | 5.39% |
| Indica II | 198 | 72.73% | 27.27% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 328 | 6.40% | 93.60% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 66 | 34.85% | 65.15% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805048181 | A->G | INTERGENIC | None |