Detailed information of SNP:
|
SNP ID:
sf0805054132(Gbrowse)
Chromosome: chr08 Position: 5054132 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 51.17% | 48.83% |
| All Indica | 792 | 79.04% | 20.96% |
| All Japonica | 496 | 10.28% | 89.72% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 207 | 47.34% | 52.66% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805054132 | G->C | INTERGENIC | None |