Detailed information of SNP:
|
SNP ID:
sf0805062349(Gbrowse)
Chromosome: chr08 Position: 5062349 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 63.88% | 36.12% |
| All Indica | 789 | 91.63% | 8.37% |
| All Japonica | 493 | 17.65% | 82.35% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 64 | 45.31% | 54.69% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805062349 | T->C | INTERGENIC | None |