Detailed information of SNP:
|
SNP ID:
sf0805063664(Gbrowse)
Chromosome: chr08 Position: 5063664 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 67.14% | 32.86% |
| All Indica | 791 | 94.31% | 5.69% |
| All Japonica | 496 | 18.75% | 81.25% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 334 | 10.18% | 89.82% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805063664 | A->G | INTERGENIC | None |