Detailed information of SNP:
|
SNP ID:
sf0805065204(Gbrowse)
Chromosome: chr08 Position: 5065204 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 62.06% | 37.94% |
| All Indica | 790 | 91.27% | 8.73% |
| All Japonica | 492 | 19.11% | 80.89% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 209 | 71.77% | 28.23% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 330 | 11.52% | 88.48% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805065204 | C->A | INTERGENIC | None |