Detailed information of SNP:
|
SNP ID:
sf0805066673(Gbrowse)
Chromosome: chr08 Position: 5066673 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 82.58% | 17.42% |
| All Indica | 798 | 82.71% | 17.29% |
| All Japonica | 497 | 81.49% | 18.51% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805066673 | A->G | INTERGENIC | None |