Detailed information of SNP:
|
SNP ID:
sf0805067076(Gbrowse)
Chromosome: chr08 Position: 5067076 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 65.55% | 34.45% |
| All Indica | 770 | 90.65% | 9.35% |
| All Japonica | 462 | 18.18% | 81.82% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 200 | 78.00% | 22.00% |
| Indica Intermediate | 199 | 91.96% | 8.04% |
| Temperate Japonica | 331 | 8.16% | 91.84% |
| Tropical Japonica | 69 | 49.28% | 50.72% |
| Japonica Intermediate | 62 | 37.10% | 62.90% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805067076 | C->T | INTERGENIC | None |