Detailed information of SNP:
|
SNP ID:
sf0805067297(Gbrowse)
Chromosome: chr08 Position: 5067297 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.86% | 31.14% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 493 | 22.72% | 77.28% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 13.77% | 86.23% |
| Tropical Japonica | 92 | 33.70% | 66.30% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805067297 | T->C | INTERGENIC | None |