Detailed information of SNP:
|
SNP ID:
sf0805067319(Gbrowse)
Chromosome: chr08 Position: 5067319 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 68.06% | 31.94% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 496 | 21.57% | 78.43% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 13.47% | 86.53% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805067319 | T->C | INTERGENIC | None |