Detailed information of SNP:
|
SNP ID:
sf0805067330(Gbrowse)
Chromosome: chr08 Position: 5067330 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 72.49% | 27.51% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 494 | 24.09% | 75.91% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 14.63% | 85.37% |
| Tropical Japonica | 91 | 37.36% | 62.64% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805067330 | C->T | INTERGENIC | None |