Detailed information of SNP:
|
SNP ID:
sf0805067772(Gbrowse)
Chromosome: chr08 Position: 5067772 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 56.97% | 43.03% |
| All Indica | 794 | 30.86% | 69.14% |
| All Japonica | 477 | 97.06% | 2.94% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 374 | 10.43% | 89.57% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 208 | 24.04% | 75.96% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 80 | 92.50% | 7.50% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805067772 | G->A | LOC_Os08g08740(LOC_Os08g08740.1) | Non-Synonymous SNP |