Detailed information of SNP:
|
SNP ID:
sf0805067921(Gbrowse)
Chromosome: chr08 Position: 5067921 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 78.01% | 21.99% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 496 | 41.73% | 58.27% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 21.86% | 78.14% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805067921 | G->A | LOC_Os08g08740(LOC_Os08g08740.1) | Synonymous |