Detailed information of SNP:
|
SNP ID:
sf0805073670(Gbrowse)
Chromosome: chr08 Position: 5073670 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 52.88% | 47.12% |
| All Indica | 792 | 72.98% | 27.02% |
| All Japonica | 494 | 15.79% | 84.21% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 209 | 33.49% | 66.51% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 93 | 59.14% | 40.86% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805073670 | G->A | INTERGENIC | None |