Detailed information of SNP:
|
SNP ID:
sf0805075222(Gbrowse)
Chromosome: chr08 Position: 5075222 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 58.28% | 41.72% |
| All Indica | 793 | 74.40% | 25.60% |
| All Japonica | 492 | 24.80% | 75.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 207 | 35.75% | 64.25% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 334 | 7.49% | 92.51% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805075222 | G->C | INTERGENIC | None |