Detailed information of SNP:
|
SNP ID:
sf0805091114(Gbrowse)
Chromosome: chr08 Position: 5091114 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1344 | 52.08% | 47.92% |
| All Indica | 743 | 62.58% | 37.42% |
| All Japonica | 479 | 27.77% | 72.23% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 362 | 66.57% | 33.43% |
| Indica II | 187 | 45.99% | 54.01% |
| Indica Intermediate | 194 | 71.13% | 28.87% |
| Temperate Japonica | 321 | 7.17% | 92.83% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 65 | 44.62% | 55.38% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805091114 | C->T | LOC_Os08g08780(LOC_Os08g08780.1) | Synonymous |